NanoPlot statistics report

NanoPlot reports

Summary statistics

dataset
Metrics
number_of_reads 3768409
number_of_bases 3478449995.0
median_read_length 373.0
mean_read_length 923.1
read_length_stdev 6225.1
n50 2051.0
active_channels 478
mean_qual 6.8
median_qual 7.5
longest_read_(with_Q):1 1787702 (2.9)
longest_read_(with_Q):2 1716936 (4.6)
longest_read_(with_Q):3 1639105 (8.3)
longest_read_(with_Q):4 1610776 (3.8)
longest_read_(with_Q):5 1531037 (4.6)
highest_Q_read_(with_length):1 30.5 (425)
highest_Q_read_(with_length):2 29.2 (683)
highest_Q_read_(with_length):3 26.5 (1147)
highest_Q_read_(with_length):4 26.0 (814)
highest_Q_read_(with_length):5 25.1 (673)
Reads >Q10: 788093 (20.9%) 956.8Mb
Reads >Q15: 1290 (0.0%) 0.5Mb
Reads >Q20: 26 (0.0%) 0.0Mb
Reads >Q25: 6 (0.0%) 0.0Mb
Reads >Q30: 1 (0.0%) 0.0Mb

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality kde plot

Read lengths vs Average read quality plot using dots after log transformation of read lengths

Read lengths vs Average read quality kde plot

Number of reads generated per channel

Cumulative yield

Cumulative yield

Number of reads over time

Number of active pores over time

Violin plot of read lengths over time

Violin plot of quality over time

Violin plot of sequencing speed over time

Cumulative yield

Cumulative yield

Number of reads over time

Number of active pores over time

Violin plot of log read lengths over time

Violin plot of quality over time

Violin plot of sequencing speed over time