NanoPlot statistics report

NanoPlot reports

Summary statistics

dataset
Metrics
number_of_reads 5147557
number_of_bases 7113658883.0
median_read_length 560.0
mean_read_length 1381.9
read_length_stdev 7052.2
n50 3184.0
active_channels 508
mean_qual 9.3
median_qual 10.2
longest_read_(with_Q):1 2665951 (4.1)
longest_read_(with_Q):2 2048357 (15.9)
longest_read_(with_Q):3 1961736 (6.0)
longest_read_(with_Q):4 1945107 (4.9)
longest_read_(with_Q):5 1891542 (4.7)
highest_Q_read_(with_length):1 38.1 (125)
highest_Q_read_(with_length):2 34.2 (86)
highest_Q_read_(with_length):3 28.1 (101)
highest_Q_read_(with_length):4 28.0 (1125)
highest_Q_read_(with_length):5 27.0 (67)
Reads >Q10: 2804899 (54.5%) 4917.5Mb
Reads >Q15: 3703 (0.1%) 8.7Mb
Reads >Q20: 91 (0.0%) 1.4Mb
Reads >Q25: 11 (0.0%) 0.0Mb
Reads >Q30: 2 (0.0%) 0.0Mb

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality kde plot

Read lengths vs Average read quality plot using dots after log transformation of read lengths

Read lengths vs Average read quality kde plot

Number of reads generated per channel

Cumulative yield

Cumulative yield

Number of reads over time

Number of active pores over time

Violin plot of read lengths over time

Violin plot of quality over time

Violin plot of sequencing speed over time

Cumulative yield

Cumulative yield

Number of reads over time

Number of active pores over time

Violin plot of log read lengths over time

Violin plot of quality over time

Violin plot of sequencing speed over time