NanoPlot statistics report
NanoPlot reports
Summary statistics
|
dataset |
| Metrics |
|
| number_of_reads |
5147557 |
| number_of_bases |
7113658883.0 |
| median_read_length |
560.0 |
| mean_read_length |
1381.9 |
| read_length_stdev |
7052.2 |
| n50 |
3184.0 |
| active_channels |
508 |
| mean_qual |
9.3 |
| median_qual |
10.2 |
| longest_read_(with_Q):1 |
2665951 (4.1) |
| longest_read_(with_Q):2 |
2048357 (15.9) |
| longest_read_(with_Q):3 |
1961736 (6.0) |
| longest_read_(with_Q):4 |
1945107 (4.9) |
| longest_read_(with_Q):5 |
1891542 (4.7) |
| highest_Q_read_(with_length):1 |
38.1 (125) |
| highest_Q_read_(with_length):2 |
34.2 (86) |
| highest_Q_read_(with_length):3 |
28.1 (101) |
| highest_Q_read_(with_length):4 |
28.0 (1125) |
| highest_Q_read_(with_length):5 |
27.0 (67) |
| Reads >Q10: |
2804899 (54.5%) 4917.5Mb |
| Reads >Q15: |
3703 (0.1%) 8.7Mb |
| Reads >Q20: |
91 (0.0%) 1.4Mb |
| Reads >Q25: |
11 (0.0%) 0.0Mb |
| Reads >Q30: |
2 (0.0%) 0.0Mb |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot
Read lengths vs Average read quality kde plot
Number of reads generated per channel
Number of reads over time
Number of active pores over time
Violin plot of read lengths over time
Violin plot of quality over time
Violin plot of sequencing speed over time
Number of reads over time
Number of active pores over time
Violin plot of log read lengths over time
Violin plot of quality over time
Violin plot of sequencing speed over time